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lolD lolD BBta_1848 BBta_1848 BBta_4040 BBta_4040 lolC lolC lolD-2 lolD-2 lolD-3 lolD-3 BBta_1847 BBta_1847 BBta_5199 BBta_5199 macB macB BBta_3109 BBta_3109 rpsK rpsK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein-releasing system (ABC transporter), ATP-binding protein lolD; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic. (234 aa)    
Predicted Functional Partners:
BBta_1848
Putative lipoprotein-releasing system transmembrane protein lolC; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
 
 0.994
BBta_4040
Putative lipoprotein-releasing system transmembrane protein (lolC); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane.
 
 0.947
lolC
Lipoprotein releasing system, transmembrane protein, LolC/E family; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein.
  
 0.941
lolD-2
Lipoprotein-releasing system ATP-binding protein (ABC superfamily, atp_bind); Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; PUBMED: 20245870.
  
  
 
0.910
lolD-3
Lipoprotein-releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 
0.909
BBta_1847
Putative efflux transporter; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.898
BBta_5199
Putative permease of ABC transporter; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane.
 
 0.862
macB
Putative macrolide ABC transporter, fusion of ATP-binding and membrane domains; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.679
BBta_3109
Putative ATPase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.658
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.652
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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